The UCSC Archaeal Genome Browser

Get Started Browsing
Using the Genome Browser

 
  Methanopyrus kandleri genome browser Halobacterium sp genome browser Sulfolobus tokodaii genome browser Haloarcula marismortui genome browser Thermofilum pendens genome browser Sulfolobus solfataricus genome browser Aeropyrum pernix genome browser Aeropyrum pernix genome browser Archaeoglobus fulgidus genome browser Thermococcus kodakaraensis genome browser Natronomonas pharaonis genome browser Pyrococcus abyssi genome browser Pyrococcus horikoshii genome browser Nanoarchaeum equitans genome browser Thermoplasma acidophilum genome browser Thermoplasma volcanium genome browser Haloquadratum walsbyi genome browser Picrophilus torridus genome browser Cenarchaeum symbiosum genome browser Ferroplasma acidarmanus genome browser Methanococcus maripaludis genome browser Methanosarcina mazei genome browser Methanospirillum hungatei genome browser Pyrococcus furiosus genome browser Methanococcus jannaschii genome browser Methanosarcina acetivorans genome browser Haloferax volcanii DS2 genome browser Methanobacterium thermoautotrophicum genome browser Pyrobaculum aerophilum genome browser Pyrobaculum calidifontis genome browser Hyperthermus butylicus genome browser Staphylothermus marinus genome browser Sulfolobus acidocaldarius genome browser Methanocorpusculum labreanum Z genome browser Methanoculleus marisnigri genome browser Methanosaeta thermophila genome browser Caldivirga maquilingensis genome browser Methanosphaera stadtmanae genome browser Pyrobaculum islandicum genome browser Pyrobaculum arsenaticum genome browser Methanosarcina barkeri genome browser
                         


Individual Archaeal & Bacterial Genome Home Pages
(click on species name to go to genome browser home page)

Extreme Ecotypes: [H] Hyperthermophile; [T] Thermophile; [P] Psychrophile; [A] Acidophile; [K] Alkaliphile; [S] Halophile

Archaea Bacteria
Euryarchaeota

Archaeoglobi
   Archaeoglobus fulgidus [H]

Halobacteria
   Haloarcula marismortui [S]
   Halobacterium sp [S]
   Haloferax volcanii [S]
   Haloquadratum walsbyi [S]
   Natronomonas pharaonis [S][K]

Methanogens

  Methanobacteria
 
  Methanococci

  Methanomicrobiales

  Methanosarcinales

   Methanopyri

   Environmental Samples
           Uncultured methanogenic archaeon RC-I

Thermococci
   Pyrococcus abyssi [H]
   Pyrococcus furiosus [H]
   Pyrococcus horikoshii [H]
   Thermococcus kodakaraensis [H]

Thermoplasmata
   Ferroplasma acidarmanus [A]
   Picrophilus torridus [T][A]
   Thermoplasma acidophilum [T][A]
   Thermoplasma volcanium [T][A]
Crenarchaeota

Desulfurococcales
   Aeropyrum pernix [H]
   Hyperthermus butylicus [H]
   Ignicoccus hospitalis [H]
   Staphylothermus marinus [H]

Sulfolobales
   Metallosphaera sedula [T][A]
   Sulfolobus acidocaldarius [T][A]
   Sulfolobus solfataricus [H][A]
   Sulfolobus tokodaii [H][A]

Thermoproteales
   Caldivirga maquilingensis [H]
   Pyrobaculum aerophilum [H]
   Pyrobaculum arsenaticum [H]
   Pyrobaculum calidifontis [H]
   Pyrobaculum islandicum [H]
   Thermofilum pendens [H]
   Thermoproteus neutrophilus [H]

Marine Mesophiles
   Cenarchaeum symbiosum     


Nanoarchaeota
  Nanoarchaeum equitans [H]

Extremophiles
   Aquifex aeolicus [H]
   Bacillus halodurans [S][K]  
   Carboxydothermus hydrogenoformans Z-2901 [T]
   Desulfotalea psychrophila LSv54 [P]
   Salinibacter ruber DSM 13855 [S]
   Thermoanaerobacter tengcongensis [T]
   Thermobifida fusca YX [T]
   Thermotoga maritima [H]
   Thermus thermophilus HB27 [T]
   Thermus thermophilus HB8 [T]
   Thermosynechococcus elongatus [T]

Deinococcus radiodurans

Selected Metal-reducing Bacteria
   Geobacillus kaustophilus HTA426
   Geobacter metallireducens GS-15
   Geobacter sulfurreducens
   Shewanella oneidensis

Selected Model Bacteria
   Bacillus subtilis
   Escherichia coli CFT073
   Escherichia coli K12
   Escherichia coli O157H7
   Salmonella enterica Choleraesuis
   Salmonella typhi

Selected Pathologens
   Campylobacter jejuni
   Helicobacter hepaticus
   Helicobacter pylori 26695
   Helicobacter pylori J99

   Vibrio cholerae O1 El Tor
   Vibrio fischeri ES114
   Vibrio parahaemolyticus
   Vibrio vulnificus CMCP6
   Vibrio vulnificus YJ016
   Vibrio cholerae O395


About

The Achaeal Genome Browsers at UCSC were developed by members of the Lowe Lab, with significant support from the UCSC Human Genome Browser group. The Archaeal Browsers are run by a slightly modified version of the UCSC Human Genome Browser system. All queries, bug reports, content corrections, suggested improvements, and new track data submissions should be sent to Todd Lowe (lowe @soe.ucsc.edu).

Additional extremophile and other model bacteria are available from main genome menu. New species are added as they become public, and upon request.

Citation

If you use the browser in your published research, please cite our publication in the Nucleic Acids Research Database Issue. Citations and positive feedback will help us continue to develop of this community resource.