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Configure Tracks on UCSC Genome Browser: Pyrococcus furiosus Feb. 2002 (pyrFur2)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing Tracks    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Chromosome position Chromosome position map
GC Percent GC Percent in 20 Base Windows
CRISPRs Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) Elements
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Prediction Tracks    
Genbank RefSeq Genbank RefSeq Gene Annotations
Gene Predictions Microbial Gene Predictions
Operon Predictions Microbial Operon Predictions
Array PCR Primers PCR Primers for Genome Array
EST Sequences EST / cDNA Sequences in Genome
Studied Loci Previously Sequenced / Studied Loci in Genbank
EasyGenes EasyGene 1.2 gene predictions
Pfam Domains Pfam Domain Hits
TIGR ORFs ORF annotation from TIGR
Conserved Domains NCBI Conserved Domain Database in genome
Megablast NR Megablast of Genome against NR database
IMG genes Annotation from Integrated Microbial Genomes DB
Rfam Rfam noncoding RNA
tRNA genes tRNA genes from tRNAscan-SE
sRNA genes C/D box guide sRNAs from snoscan
Genbank ncRNAs Annotated Genbank ncRNAs
BlastP Related BlastP Hits to Related Species
Intergenic Regions Intergenic Regions between proteins
BlastX Related BlastX Hits to Related Species
Intergenics Microarray Intergenics on microarray
-   Expression and Regulation    
IS Elements Insertion Sequence Elements
TFB Sites (Pal) Predicted Transcription Factor Binding Site Palindromes
Promoter + Log-odds scan for promoters on plus strand (16 base window)
Promoter - Log-odds scan for promoters on minus strand (16 base window)
Poly-T term (+) Poly-T Terminators plus strand (7 nt window)
Shine-DG + Shine-Dalgarno scan on plus strand (10 base window)
Poly-T term (-) Poly-T Terminators minus strand (7 nt window)
Shine-DG - Shine-Dalgarno scan on minus strand (10 base window)
Hale small RNA coverage(+) Plus Strand Small RNA Reads (Hale et al)
Hale small RNA coverage(-) Minus Strand Small RNA Coverage (Hale et al)
Hale small RNA ends(+) Plus Strand Small RNA Ends (Hale et al)
Hale small RNA ends(-) Minus Strand Small RNA Ends (Hale et al)
Gamma Radiation Effects of Gamma Radiation
Sulfur Sulfur Microarray
-   Comparative Genomics    
Self Blastz Self Blastz Alignments
Self homologs Homologs Within Genome
Aligned Features Differences Aligned Features from other species
Conservation Multiz alignment for Thermococcales
BlastP Crenarchaea BlastP Hits to Crenarchaea by Phyla
BlastP Euryarchaea BlastP Hits to Euryarchaea by Phyla
BlastP Other Archaea BlastP Hits to Other Archaea
BlastP Viruses BlastP Hits to Viruses
BlastP Bacteria BlastP Hits to Bacteria by Phyla
BlastX Crenarchaea BlastX Hits to Crenarchaea by Phyla
BlastX Euryarchaea BlastX Hits to Euryarchaea by Phyla
BlastX Other Archaea BlastX Hits to Other Archaea
BlastX Bacteria BlastX Hits to Bacteria by Phyla