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Follow these citation guidelines when
using applications from the Genome Browser tool suite or
data from the UCSC Genome Browser database in a research
work that will be published in a journal or on the
Internet. In addition to the relevant
paper, please include a reference to the Genome Browser
website in your manuscript: http://archaea.ucsc.edu/. Be sure to
mention the release date of the genome assembly used in
your work to faciliate the examination of your data by
reviewers and the readers.
The Archaeal UCSC Genome Browser:
Schneider, K.L., Pollard, K.S., Baertsch, R., Pohl, A., and Lowe, T.M.
The UCSC Archaeal Genome Browser.
Nucleic Acids Res. TBA (2006).
The original UCSC Genome Browser (focuses on vertebrates and model eukaryotes):
Kent, W.J., Sugnet, C. W., Furey, T. S.,
Roskin, K.M., Pringle, T. H., Zahler, A. M., and Haussler,
D.
The Human Genome Browser at UCSC.
Genome Res. 12(6), 996-1006 (2002).
UCSC Genome Browser database/data:
Karolchik, D., Baertsch, R., Diekhans, M., Furey, T.S.,
Hinrichs, A., Lu, Y.T., Roskin, K.M., Schwartz, M.,
Sugnet, C.W., Thomas, D.J., Weber, R.J., Haussler, D. and
Kent, W.J.
The UCSC Genome Browser Database.
Nucl. Acids Res 31(1), 51-54 (2003).
Cite this
paper for annotation data extracted from the Genome
Browser database. Annotation tracks should also be
credited according to their source, which can be found
on the track's description page or on the Genome Browser
Credits page.
BLAT alignment tool:
Kent, W.J.
BLAT - The BLAST-Like Alignment Tool.
Genome Res. 12(4), 656-664 (2002).
UCSC Table Browser:
Karolchik, D., Hinrichs, A.S., Furey, T.S., Roskin, K.M.,
Sugnet, C.W., Haussler, D. and Kent, W.J.
The UCSC Table Browser data retrieval
tool.
Nucl. Acids Res. 32(Suppl 1), D493-D496
(2004).
UCSC Proteome Browser:
Hsu, F., Pringle, T.H., Kuhn, R.M., Karolchik, D.,
Diekhans, M., Haussler, D., and Kent, W.J.
The UCSC Proteome Browser.
Nucl. Acids Res. 33(suppl 1), D454-D458 (2004).
Journal-quality screen shots of the
Genome Browser can be produced by using the PDF/PS
utility accessed via the top menu bar link on the tracks
display page. When including a screen shot in your
manuscript, reference
http://genome.ucsc.edu in the caption and cite
the Genome Browser paper in the manuscript. Don't forget
to mention the genome assembly used to produce the image.
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